MANIFEST.in
README.md
setup.cfg
setup.py
bmtk/__init__.py
bmtk/__init__.pyc
bmtk.egg-info/PKG-INFO
bmtk.egg-info/SOURCES.txt
bmtk.egg-info/dependency_links.txt
bmtk.egg-info/requires.txt
bmtk.egg-info/top_level.txt
bmtk/analyzer/__init__.py
bmtk/analyzer/cell_vars.py
bmtk/analyzer/firing_rates.py
bmtk/analyzer/io_tools.py
bmtk/analyzer/spike_trains.py
bmtk/analyzer/spikes_analyzer.py
bmtk/analyzer/spikes_loader.py
bmtk/analyzer/utils.py
bmtk/analyzer/visualization/__init__.py
bmtk/analyzer/visualization/rasters.py
bmtk/analyzer/visualization/spikes.py
bmtk/analyzer/visualization/widgets.py
bmtk/builder/__init__.py
bmtk/builder/connection_map.py
bmtk/builder/connector.py
bmtk/builder/edge.py
bmtk/builder/functor_cache.py
bmtk/builder/id_generator.py
bmtk/builder/iterator.py
bmtk/builder/network.py
bmtk/builder/node.py
bmtk/builder/node_pool.py
bmtk/builder/node_set.py
bmtk/builder/auxi/__init__.py
bmtk/builder/auxi/edge_connectors.py
bmtk/builder/auxi/node_params.py
bmtk/builder/bionet/__init__.py
bmtk/builder/bionet/swc_reader.py
bmtk/builder/formats/__init__.py
bmtk/builder/formats/hdf5_format.py
bmtk/builder/formats/iformats.py
bmtk/builder/io/__init__.py
bmtk/builder/networks/__init__.py
bmtk/builder/networks/dm_network.py
bmtk/builder/networks/input_network.py
bmtk/builder/networks/mpi_network.py
bmtk/builder/networks/nxnetwork.py
bmtk/builder/networks/sparse_network.py
bmtk/simulator/__init__.py
bmtk/simulator/bionet/README.md
bmtk/simulator/bionet/__init__.py
bmtk/simulator/bionet/biocell.py
bmtk/simulator/bionet/bionetwork.py
bmtk/simulator/bionet/biosimulator.py
bmtk/simulator/bionet/cell.py
bmtk/simulator/bionet/config.py
bmtk/simulator/bionet/gids.py
bmtk/simulator/bionet/iclamp.py
bmtk/simulator/bionet/import3d.hoc
bmtk/simulator/bionet/io_tools.py
bmtk/simulator/bionet/morphology.py
bmtk/simulator/bionet/nml_reader.py
bmtk/simulator/bionet/nrn.py
bmtk/simulator/bionet/pointprocesscell.py
bmtk/simulator/bionet/pointsomacell.py
bmtk/simulator/bionet/pyfunction_cache.py
bmtk/simulator/bionet/sonata_adaptors.py
bmtk/simulator/bionet/utils.py
bmtk/simulator/bionet/virtualcell.py
bmtk/simulator/bionet/default_setters/__init__.py
bmtk/simulator/bionet/default_setters/cell_models.py
bmtk/simulator/bionet/default_setters/synapse_models.py
bmtk/simulator/bionet/default_setters/synaptic_weights.py
bmtk/simulator/bionet/default_templates/BioAxonStub.hoc
bmtk/simulator/bionet/default_templates/Biophys1.hoc
bmtk/simulator/bionet/default_templates/advance.hoc
bmtk/simulator/bionet/import3d/import3d_gui.hoc
bmtk/simulator/bionet/import3d/import3d_sec.hoc
bmtk/simulator/bionet/import3d/read_morphml.hoc
bmtk/simulator/bionet/import3d/read_nlcda.hoc
bmtk/simulator/bionet/import3d/read_nlcda3.hoc
bmtk/simulator/bionet/import3d/read_nts.hoc
bmtk/simulator/bionet/import3d/read_swc.hoc
bmtk/simulator/bionet/modules/__init__.py
bmtk/simulator/bionet/modules/ecp.py
bmtk/simulator/bionet/modules/record_cellvars.py
bmtk/simulator/bionet/modules/record_netcons.py
bmtk/simulator/bionet/modules/record_spikes.py
bmtk/simulator/bionet/modules/save_synapses.py
bmtk/simulator/bionet/modules/sim_module.py
bmtk/simulator/bionet/modules/xstim.py
bmtk/simulator/bionet/modules/xstim_waveforms.py
bmtk/simulator/bionet/schemas/config_schema.json
bmtk/simulator/bionet/schemas/csv_edge_types.json
bmtk/simulator/bionet/schemas/csv_node_types_external.json
bmtk/simulator/bionet/schemas/csv_node_types_internal.json
bmtk/simulator/bionet/schemas/csv_nodes_external.json
bmtk/simulator/bionet/schemas/csv_nodes_internal.json
bmtk/simulator/core/__init__.py
bmtk/simulator/core/config.py
bmtk/simulator/core/edge_population.py
bmtk/simulator/core/graph.py
bmtk/simulator/core/io_tools.py
bmtk/simulator/core/network_reader.py
bmtk/simulator/core/node_population.py
bmtk/simulator/core/node_sets.py
bmtk/simulator/core/simulator.py
bmtk/simulator/core/simulator_network.py
bmtk/simulator/core/sonata_reader/__init__.py
bmtk/simulator/core/sonata_reader/edge_adaptor.py
bmtk/simulator/core/sonata_reader/network_reader.py
bmtk/simulator/core/sonata_reader/node_adaptor.py
bmtk/simulator/filternet/__init__.py
bmtk/simulator/filternet/cell.py
bmtk/simulator/filternet/cell_models.py
bmtk/simulator/filternet/config.py
bmtk/simulator/filternet/filternetwork.py
bmtk/simulator/filternet/filters.py
bmtk/simulator/filternet/filtersimulator.py
bmtk/simulator/filternet/io_tools.py
bmtk/simulator/filternet/pyfunction_cache.py
bmtk/simulator/filternet/sonata_adaptors.py
bmtk/simulator/filternet/transfer_functions.py
bmtk/simulator/filternet/utils.py
bmtk/simulator/filternet/default_setters/__init__.py
bmtk/simulator/filternet/default_setters/cell_loaders.py
bmtk/simulator/filternet/lgnmodel/__init__.py
bmtk/simulator/filternet/lgnmodel/cellmetrics.py
bmtk/simulator/filternet/lgnmodel/cellmodel.py
bmtk/simulator/filternet/lgnmodel/cursor.py
bmtk/simulator/filternet/lgnmodel/fitfuns.py
bmtk/simulator/filternet/lgnmodel/kernel.py
bmtk/simulator/filternet/lgnmodel/lattice_unit_constructor.py
bmtk/simulator/filternet/lgnmodel/lgnmodel1.py
bmtk/simulator/filternet/lgnmodel/linearfilter.py
bmtk/simulator/filternet/lgnmodel/lnunit.py
bmtk/simulator/filternet/lgnmodel/make_cell_list.py
bmtk/simulator/filternet/lgnmodel/movie.py
bmtk/simulator/filternet/lgnmodel/poissongeneration.py
bmtk/simulator/filternet/lgnmodel/singleunitcell.py
bmtk/simulator/filternet/lgnmodel/spatialfilter.py
bmtk/simulator/filternet/lgnmodel/temporalfilter.py
bmtk/simulator/filternet/lgnmodel/transferfunction.py
bmtk/simulator/filternet/lgnmodel/util_fns.py
bmtk/simulator/filternet/lgnmodel/utilities.py
bmtk/simulator/filternet/lgnmodel/cell_metrics/sOFF_cell_data.csv
bmtk/simulator/filternet/lgnmodel/cell_metrics/sON_cell_data.csv
bmtk/simulator/filternet/lgnmodel/cell_metrics/sus_sus_cells_v3.csv
bmtk/simulator/filternet/lgnmodel/cell_metrics/tOFF_cell_data.csv
bmtk/simulator/filternet/lgnmodel/cell_metrics/tON_cell_data.csv
bmtk/simulator/filternet/lgnmodel/cell_metrics/trans_sus_cells_v3.csv
bmtk/simulator/filternet/modules/__init__.py
bmtk/simulator/filternet/modules/base.py
bmtk/simulator/filternet/modules/create_spikes.py
bmtk/simulator/filternet/modules/record_rates.py
bmtk/simulator/mintnet/Image_Library.py
bmtk/simulator/mintnet/Image_Library_Supervised.py
bmtk/simulator/mintnet/__init__.py
bmtk/simulator/mintnet/analysis/LocallySparseNoise.py
bmtk/simulator/mintnet/analysis/StaticGratings.py
bmtk/simulator/mintnet/analysis/__init__.py
bmtk/simulator/mintnet/hmax/C_Layer.py
bmtk/simulator/mintnet/hmax/Readout_Layer.py
bmtk/simulator/mintnet/hmax/S1_Layer.py
bmtk/simulator/mintnet/hmax/S_Layer.py
bmtk/simulator/mintnet/hmax/Sb_Layer.py
bmtk/simulator/mintnet/hmax/ViewTunedLayer.py
bmtk/simulator/mintnet/hmax/__init__.py
bmtk/simulator/mintnet/hmax/hmax.py
bmtk/simulator/pointnet/__init__.py
bmtk/simulator/pointnet/config.py
bmtk/simulator/pointnet/gids.py
bmtk/simulator/pointnet/glif_utils.py
bmtk/simulator/pointnet/io_tools.py
bmtk/simulator/pointnet/pointnetwork.py
bmtk/simulator/pointnet/pointsimulator.py
bmtk/simulator/pointnet/property_map.py
bmtk/simulator/pointnet/pyfunction_cache.py
bmtk/simulator/pointnet/sonata_adaptors.py
bmtk/simulator/pointnet/utils.py
bmtk/simulator/pointnet/default_setters/__init__.py
bmtk/simulator/pointnet/default_setters/synapse_models.py
bmtk/simulator/pointnet/default_setters/synaptic_weights.py
bmtk/simulator/pointnet/modules/__init__.py
bmtk/simulator/pointnet/modules/multimeter_reporter.py
bmtk/simulator/pointnet/modules/record_spikes.py
bmtk/simulator/popnet/__init__.py
bmtk/simulator/popnet/config.py
bmtk/simulator/popnet/popedge.py
bmtk/simulator/popnet/popnetwork.py
bmtk/simulator/popnet/popnetwork_OLD.py
bmtk/simulator/popnet/popnode.py
bmtk/simulator/popnet/popsimulator.py
bmtk/simulator/popnet/sonata_adaptors.py
bmtk/simulator/popnet/utils.py
bmtk/simulator/popnet/property_schemas/__init__.py
bmtk/simulator/popnet/property_schemas/base_schema.py
bmtk/simulator/popnet/property_schemas/property_schema_ver0.py
bmtk/simulator/popnet/property_schemas/property_schema_ver1.py
bmtk/simulator/utils/__init__.py
bmtk/simulator/utils/config.py
bmtk/simulator/utils/graph.py
bmtk/simulator/utils/io.py
bmtk/simulator/utils/load_spikes.py
bmtk/simulator/utils/nwb.py
bmtk/simulator/utils/property_maps.py
bmtk/simulator/utils/sim_validator.py
bmtk/simulator/utils/simulation_inputs.py
bmtk/simulator/utils/simulation_reports.py
bmtk/simulator/utils/scripts/convert_filters.py
bmtk/simulator/utils/stimulus/LocallySparseNoise.py
bmtk/simulator/utils/stimulus/NaturalScenes.py
bmtk/simulator/utils/stimulus/StaticGratings.py
bmtk/simulator/utils/stimulus/__init__.py
bmtk/simulator/utils/stimulus/lsn.npy
bmtk/simulator/utils/tools/__init__.py
bmtk/simulator/utils/tools/process_spikes.py
bmtk/simulator/utils/tools/spatial.py
bmtk/tests/__init__.py
bmtk/tests/builder/test_connection_map.py
bmtk/tests/builder/test_connector.py
bmtk/tests/builder/test_densenetwork.py
bmtk/tests/builder/test_edge_iterator.py
bmtk/tests/builder/test_id_generator.py
bmtk/tests/builder/test_iterator.py
bmtk/tests/builder/test_node_pool.py
bmtk/tests/builder/test_node_set.py
bmtk/tests/simulator/__init__.py
bmtk/tests/simulator/bionet/__init__.py
bmtk/tests/simulator/bionet/bionet_virtual_files.py
bmtk/tests/simulator/bionet/conftest.py
bmtk/tests/simulator/bionet/set_cell_params.py
bmtk/tests/simulator/bionet/set_syn_params.py
bmtk/tests/simulator/bionet/set_weights.py
bmtk/tests/simulator/bionet/test_biograph.py
bmtk/tests/simulator/bionet/test_gids.py
bmtk/tests/simulator/bionet/test_nrn.py
bmtk/tests/simulator/filternet/test_default_setters.py
bmtk/tests/simulator/filternet/lgnmodel/generate_figs.py
bmtk/tests/simulator/filternet/lgnmodel/test_kernels.py
bmtk/tests/simulator/filternet/lgnmodel/test_movie.py
bmtk/tests/simulator/filternet/lgnmodel/test_subclass_metrics.py
bmtk/tests/simulator/filternet/lgnmodel/test_transferfunction.py
bmtk/tests/simulator/filternet/lgnmodel/test_units.py
bmtk/tests/simulator/filternet/lgnmodel/test_utils.py
bmtk/tests/simulator/pointnet/__init__.py
bmtk/tests/simulator/pointnet/conftest.py
bmtk/tests/simulator/pointnet/pointnet_virtual_files.py
bmtk/tests/simulator/pointnet/test_pointgraph.py
bmtk/tests/simulator/popnet/__init__.py
bmtk/tests/simulator/popnet/popnet_virtual_files.py
bmtk/tests/simulator/popnet/test_popgraph.py
bmtk/tests/simulator/utils/__init__.py
bmtk/tests/simulator/utils/test_config.py
bmtk/tests/simulator/utils/files/circuit_config.json
bmtk/tests/simulator/utils/files/config.json
bmtk/tests/simulator/utils/files/simulator_config.json
bmtk/tests/utils/reports/compartment/test_compartment_reader.py
bmtk/tests/utils/reports/compartment/test_compartment_report.py
bmtk/tests/utils/reports/compartment/test_compartment_writer.py
bmtk/tests/utils/reports/compartment/compartment_files/multi_population_report.h5
bmtk/tests/utils/reports/spike_trains/create_files.py
bmtk/tests/utils/reports/spike_trains/test_file_readers.py
bmtk/tests/utils/reports/spike_trains/test_file_writers.py
bmtk/tests/utils/reports/spike_trains/test_sonata_adaptor.py
bmtk/tests/utils/reports/spike_trains/test_spikes_buffer.py
bmtk/tests/utils/reports/spike_trains/spike_files/spikes.h5
bmtk/tests/utils/reports/spike_trains/spike_files/spikes.multipop.csv
bmtk/tests/utils/reports/spike_trains/spike_files/spikes.multipop.h5
bmtk/tests/utils/reports/spike_trains/spike_files/spikes.noheader.nopop.csv
bmtk/tests/utils/reports/spike_trains/spike_files/spikes.old.h5
bmtk/tests/utils/reports/spike_trains/spike_files/spikes.one_pop.csv
bmtk/tests/utils/reports/spike_trains/spike_files/spikes.one_pop.h5
bmtk/tests/utils/reports/spike_trains/spike_files/spikes.onepop.v1.0.nwb
bmtk/utils/__init__.py
bmtk/utils/hdf5_helper.py
bmtk/utils/property_schema.py
bmtk/utils/sim_setup.py
bmtk/utils/converters/__init__.py
bmtk/utils/converters/hoc_converter.py
bmtk/utils/converters/sonata/__init__.py
bmtk/utils/converters/sonata/edge_converters.py
bmtk/utils/converters/sonata/node_converters.py
bmtk/utils/io/__init__.py
bmtk/utils/io/cell_vars.py
bmtk/utils/io/firing_rates.py
bmtk/utils/io/ioutils.py
bmtk/utils/io/spike_trains.py
bmtk/utils/io/tabular_network.py
bmtk/utils/io/tabular_network_v0.py
bmtk/utils/io/tabular_network_v1.py
bmtk/utils/reports/__init__.py
bmtk/utils/reports/compartment/__init__.py
bmtk/utils/reports/compartment/compartment_reader.py
bmtk/utils/reports/compartment/compartment_report.py
bmtk/utils/reports/compartment/compartment_writer.py
bmtk/utils/reports/compartment/core.py
bmtk/utils/reports/spike_trains/__init__.py
bmtk/utils/reports/spike_trains/core.py
bmtk/utils/reports/spike_trains/plotting.py
bmtk/utils/reports/spike_trains/spike_train_buffer.py
bmtk/utils/reports/spike_trains/spike_trains.py
bmtk/utils/reports/spike_trains/spike_trains_file.py
bmtk/utils/reports/spike_trains/stats.py
bmtk/utils/reports/spike_trains/adaptors/__init__.py
bmtk/utils/reports/spike_trains/adaptors/csv_adaptors.py
bmtk/utils/reports/spike_trains/adaptors/nwb_adaptors.py
bmtk/utils/reports/spike_trains/adaptors/sonata_adaptors.py
bmtk/utils/scripts/sonata.circuit_config.json
bmtk/utils/scripts/sonata.simulation_config.json
bmtk/utils/scripts/bionet/default_config.json
bmtk/utils/scripts/bionet/run_bionet.py
bmtk/utils/scripts/bionet/biophysical_neuron_models/318331342_fit.json
bmtk/utils/scripts/bionet/biophysical_neuron_models/472363762_fit.json
bmtk/utils/scripts/bionet/biophysical_neuron_models/472912177_fit.json
bmtk/utils/scripts/bionet/biophysical_neuron_models/473862421_fit.json
bmtk/utils/scripts/bionet/biophysical_neuron_models/473863035_fit.json
bmtk/utils/scripts/bionet/biophysical_neuron_models/473863510_fit.json
bmtk/utils/scripts/bionet/biophysical_neuron_models/485184849_fit.json
bmtk/utils/scripts/bionet/mechanisms/modfiles/CaDynamics.mod
bmtk/utils/scripts/bionet/mechanisms/modfiles/Ca_HVA.mod
bmtk/utils/scripts/bionet/mechanisms/modfiles/Ca_LVA.mod
bmtk/utils/scripts/bionet/mechanisms/modfiles/Ih.mod
bmtk/utils/scripts/bionet/mechanisms/modfiles/Im.mod
bmtk/utils/scripts/bionet/mechanisms/modfiles/Im_v2.mod
bmtk/utils/scripts/bionet/mechanisms/modfiles/K_P.mod
bmtk/utils/scripts/bionet/mechanisms/modfiles/K_T.mod
bmtk/utils/scripts/bionet/mechanisms/modfiles/Kd.mod
bmtk/utils/scripts/bionet/mechanisms/modfiles/Kv2like.mod
bmtk/utils/scripts/bionet/mechanisms/modfiles/Kv3_1.mod
bmtk/utils/scripts/bionet/mechanisms/modfiles/NaTa.mod
bmtk/utils/scripts/bionet/mechanisms/modfiles/NaTs.mod
bmtk/utils/scripts/bionet/mechanisms/modfiles/NaV.mod
bmtk/utils/scripts/bionet/mechanisms/modfiles/Nap.mod
bmtk/utils/scripts/bionet/mechanisms/modfiles/SK.mod
bmtk/utils/scripts/bionet/mechanisms/modfiles/vecevent.mod
bmtk/utils/scripts/bionet/morphologies/Nr5a1_471087815_m.swc
bmtk/utils/scripts/bionet/morphologies/Pvalb_469628681_m.swc
bmtk/utils/scripts/bionet/morphologies/Pvalb_470522102_m.swc
bmtk/utils/scripts/bionet/morphologies/Rorb_325404214_m.swc
bmtk/utils/scripts/bionet/morphologies/Scnn1a_473845048_m.swc
bmtk/utils/scripts/bionet/point_neuron_models/IntFire1_exc_1.json
bmtk/utils/scripts/bionet/point_neuron_models/IntFire1_inh_1.json
bmtk/utils/scripts/bionet/synaptic_models/AMPA_ExcToExc.json
bmtk/utils/scripts/bionet/synaptic_models/AMPA_ExcToInh.json
bmtk/utils/scripts/bionet/synaptic_models/GABA_InhToExc.json
bmtk/utils/scripts/bionet/synaptic_models/GABA_InhToInh.json
bmtk/utils/scripts/bionet/synaptic_models/instanteneousExc.json
bmtk/utils/scripts/bionet/synaptic_models/instanteneousInh.json
bmtk/utils/scripts/bionet/templates/BioAllen_old.hoc
bmtk/utils/scripts/bionet/templates/BioAxonStub.hoc
bmtk/utils/scripts/bionet/templates/Biophys1.hoc
bmtk/utils/scripts/filternet/run_filternet.py
bmtk/utils/scripts/filternet/filter_models/sOFF_TF1.json
bmtk/utils/scripts/filternet/filter_models/sOFF_TF15.json
bmtk/utils/scripts/filternet/filter_models/sOFF_TF2.json
bmtk/utils/scripts/filternet/filter_models/sOFF_TF4.json
bmtk/utils/scripts/filternet/filter_models/sOFF_TF8.json
bmtk/utils/scripts/filternet/filter_models/sON_TF1.json
bmtk/utils/scripts/filternet/filter_models/sON_TF2.json
bmtk/utils/scripts/filternet/filter_models/sON_TF4.json
bmtk/utils/scripts/filternet/filter_models/sON_TF8.json
bmtk/utils/scripts/filternet/filter_models/tOFF_TF15.json
bmtk/utils/scripts/filternet/filter_models/tOFF_TF4.json
bmtk/utils/scripts/filternet/filter_models/tOFF_TF8.json
bmtk/utils/scripts/pointnet/run_pointnet.py
bmtk/utils/scripts/pointnet/point_neuron_models/472363762_point.json
bmtk/utils/scripts/pointnet/point_neuron_models/472912177_point.json
bmtk/utils/scripts/pointnet/point_neuron_models/473862421_point.json
bmtk/utils/scripts/pointnet/point_neuron_models/473863035_point.json
bmtk/utils/scripts/pointnet/point_neuron_models/473863510_point.json
bmtk/utils/scripts/pointnet/point_neuron_models/IntFire1_exc_point.json
bmtk/utils/scripts/pointnet/point_neuron_models/IntFire1_inh_point.json
bmtk/utils/scripts/pointnet/point_neuron_models/filter_point.json
bmtk/utils/scripts/pointnet/synaptic_models/ExcToExc.json
bmtk/utils/scripts/pointnet/synaptic_models/ExcToInh.json
bmtk/utils/scripts/pointnet/synaptic_models/InhToExc.json
bmtk/utils/scripts/pointnet/synaptic_models/InhToInh.json
bmtk/utils/scripts/pointnet/synaptic_models/instanteneousExc.json
bmtk/utils/scripts/pointnet/synaptic_models/instanteneousInh.json
bmtk/utils/scripts/popnet/run_popnet.py
bmtk/utils/scripts/popnet/population_models/exc_model.json
bmtk/utils/scripts/popnet/population_models/inh_model.json
bmtk/utils/scripts/popnet/synaptic_models/ExcToExc.json
bmtk/utils/scripts/popnet/synaptic_models/ExcToInh.json
bmtk/utils/scripts/popnet/synaptic_models/InhToExc.json
bmtk/utils/scripts/popnet/synaptic_models/InhToInh.json
bmtk/utils/scripts/popnet/synaptic_models/input_ExcToExc.json
bmtk/utils/scripts/popnet/synaptic_models/input_ExcToInh.json
bmtk/utils/sonata/__init__.py
bmtk/utils/sonata/column_property.py
bmtk/utils/sonata/config.py
bmtk/utils/sonata/edge.py
bmtk/utils/sonata/file.py
bmtk/utils/sonata/file_root.py
bmtk/utils/sonata/group.py
bmtk/utils/sonata/node.py
bmtk/utils/sonata/population.py
bmtk/utils/sonata/types_table.py
bmtk/utils/sonata/utils.py
bmtk/utils/spike_trains/__init__.py
bmtk/utils/spike_trains/spikes_csv.py
bmtk/utils/spike_trains/spikes_file.py