AUTHORS.txt
LICENSE.md
MANIFEST.in
README.md
setup.py
fastlmm/__init__.py
fastlmm.egg-info/PKG-INFO
fastlmm.egg-info/SOURCES.txt
fastlmm.egg-info/dependency_links.txt
fastlmm.egg-info/requires.txt
fastlmm.egg-info/top_level.txt
fastlmm/association/FastLmmSet.py
fastlmm/association/FastLmmSetLOOC.py
fastlmm/association/LeaveOneChromosomeOut.py
fastlmm/association/LocoGwas.py
fastlmm/association/PairResult.py
fastlmm/association/PrecomputeLocoPcs.py
fastlmm/association/Result.py
fastlmm/association/__init__.py
fastlmm/association/_matchscript.py
fastlmm/association/_pipelines.py
fastlmm/association/epistasis.py
fastlmm/association/fixed.py
fastlmm/association/gwas_eval.py
fastlmm/association/lrt.py
fastlmm/association/score.py
fastlmm/association/single_snp.py
fastlmm/association/snp_set.py
fastlmm/association/testCV.py
fastlmm/association/varcomp_test.py
fastlmm/association/windowing_gwas.py
fastlmm/association/tests/Cv.py
fastlmm/association/tests/LRT_up.py
fastlmm/association/tests/Lrt.py
fastlmm/association/tests/Sc.py
fastlmm/association/tests/__init__.py
fastlmm/association/tests/test_gwas.py
fastlmm/association/tests/test_single_snp.py
fastlmm/association/tests/test_snp_set.py
fastlmm/association/tests/testepistasis.py
fastlmm/association/tests/tests_util.py
fastlmm/association/Fastlmm_autoselect/FastLmmC.Manual.pdf
fastlmm/association/Fastlmm_autoselect/FastLmmC.exe
fastlmm/association/Fastlmm_autoselect/fastlmmc
fastlmm/association/Fastlmm_autoselect/libiomp5md.dll
fastlmm/external/__init__.py
fastlmm/external/pca.py
fastlmm/external/util/__init__.py
fastlmm/external/util/math.py
fastlmm/feature_selection/PerformSelectionDistributable.py
fastlmm/feature_selection/__init__.py
fastlmm/feature_selection/feature_selection_cv.py
fastlmm/feature_selection/feature_selection_example.py
fastlmm/feature_selection/feature_selection_two_kernel.py
fastlmm/feature_selection/kernel_ridge_cv.py
fastlmm/feature_selection/test.py
fastlmm/feature_selection/examples/ScanISP.Toydata.config.py
fastlmm/feature_selection/examples/ScanLMM.Toydata.config.py
fastlmm/feature_selection/examples/ScanOSP.Toydata.config.py
fastlmm/feature_selection/examples/bronze.txt
fastlmm/feature_selection/examples/toydata.5chrom.bed
fastlmm/feature_selection/examples/toydata.5chrom.bim
fastlmm/feature_selection/examples/toydata.5chrom.fam
fastlmm/feature_selection/examples/toydata.bed
fastlmm/feature_selection/examples/toydata.bim
fastlmm/feature_selection/examples/toydata.cov
fastlmm/feature_selection/examples/toydata.dat
fastlmm/feature_selection/examples/toydata.fam
fastlmm/feature_selection/examples/toydata.iidmajor.hdf5
fastlmm/feature_selection/examples/toydata.map
fastlmm/feature_selection/examples/toydata.phe
fastlmm/feature_selection/examples/toydata.shufflePlus.phe
fastlmm/feature_selection/examples/toydata.sim
fastlmm/feature_selection/examples/toydata.snpmajor.hdf5
fastlmm/feature_selection/examples/toydataTest.phe
fastlmm/feature_selection/examples/toydataTrain.phe
fastlmm/inference/__init__.py
fastlmm/inference/ep.py
fastlmm/inference/glmm.py
fastlmm/inference/laplace.py
fastlmm/inference/likelihood.py
fastlmm/inference/linear_regression.py
fastlmm/inference/lmm.py
fastlmm/inference/lmm2k.py
fastlmm/inference/lmm_cov.py
fastlmm/inference/test.py
fastlmm/pyplink/__init__.py
fastlmm/pyplink/plink.py
fastlmm/pyplink/setup.py
fastlmm/pyplink/vcfpy.py
fastlmm/pyplink/altset_list/Consecutive.py
fastlmm/pyplink/altset_list/MinMaxSetSize.py
fastlmm/pyplink/altset_list/NucRangeSet.py
fastlmm/pyplink/altset_list/SnpAndSetNameCollection.py
fastlmm/pyplink/altset_list/Subset.py
fastlmm/pyplink/altset_list/__init__.py
fastlmm/pyplink/snpreader/Bed.py
fastlmm/pyplink/snpreader/Dat.py
fastlmm/pyplink/snpreader/Hdf5.py
fastlmm/pyplink/snpreader/__init__.py
fastlmm/pyplink/snpset/AllSnps.py
fastlmm/pyplink/snpset/PositionRange.py
fastlmm/pyplink/snpset/RandomSnpSet.py
fastlmm/pyplink/snpset/SnpIndexList.py
fastlmm/pyplink/snpset/SnpSetAndName.py
fastlmm/pyplink/snpset/SnpsFromFile.py
fastlmm/pyplink/snpset/__init__.py
fastlmm/util/MetaDistributable.py
fastlmm/util/NearBronze.py
fastlmm/util/SamplePi.py
fastlmm/util/VertexCut.py
fastlmm/util/__init__.py
fastlmm/util/computePC.py
fastlmm/util/compute_auto_pcs.py
fastlmm/util/distributable.py
fastlmm/util/distributabletest.py
fastlmm/util/distributed_map.py
fastlmm/util/genphen.py
fastlmm/util/gensnp.py
fastlmm/util/indirectdistributable.py
fastlmm/util/mingrid.py
fastlmm/util/pickle_io.py
fastlmm/util/preprocess.py
fastlmm/util/run_fastlmmc.py
fastlmm/util/test.py
fastlmm/util/testdistributable.py
fastlmm/util/util.py
fastlmm/util/runner/HPC.py
fastlmm/util/runner/Hadoop.py
fastlmm/util/runner/Hadoop2.py
fastlmm/util/runner/Local.py
fastlmm/util/runner/LocalInParts.py
fastlmm/util/runner/LocalMapper.py
fastlmm/util/runner/LocalMultiProc.py
fastlmm/util/runner/LocalReducer.py
fastlmm/util/runner/__init__.py
fastlmm/util/runner/localfromranges.py
fastlmm/util/standardizer/Beta.py
fastlmm/util/standardizer/Unit.py
fastlmm/util/standardizer/__init__.py
fastlmm/util/stats/__init__.py
fastlmm/util/stats/chi2mixture.py
fastlmm/util/stats/plotp.py
fastlmm/util/stats/quadform/__init__.py
fastlmm/util/stats/quadform/qfc_src/QFC.cpp
fastlmm/util/stats/quadform/qfc_src/wrap_qfc.pyx
fastlmm/association/FastLmmSet.py
fastlmm/association/FastLmmSetLOOC.py
fastlmm/association/LeaveOneChromosomeOut.py
fastlmm/association/LocoGwas.py
fastlmm/association/PairResult.py
fastlmm/association/PrecomputeLocoPcs.py
fastlmm/association/Result.py
fastlmm/association/__init__.py
fastlmm/association/_matchscript.py
fastlmm/association/_pipelines.py
fastlmm/association/epistasis.py
fastlmm/association/fixed.py
fastlmm/association/gwas_eval.py
fastlmm/association/lrt.py
fastlmm/association/score.py
fastlmm/association/single_snp.py
fastlmm/association/snp_set.py
fastlmm/association/testCV.py
fastlmm/association/varcomp_test.py
fastlmm/association/windowing_gwas.py
fastlmm/association/Fastlmm_autoselect/FastLmmC.Manual.pdf
fastlmm/association/Fastlmm_autoselect/FastLmmC.exe
fastlmm/association/Fastlmm_autoselect/fastlmmc
fastlmm/association/Fastlmm_autoselect/libiomp5md.dll
fastlmm/association/tests/Cv.py
fastlmm/association/tests/LRT_up.py
fastlmm/association/tests/Lrt.py
fastlmm/association/tests/Sc.py
fastlmm/association/tests/__init__.py
fastlmm/association/tests/test_gwas.py
fastlmm/association/tests/test_single_snp.py
fastlmm/association/tests/test_snp_set.py
fastlmm/association/tests/testepistasis.py
fastlmm/association/tests/tests_util.py
fastlmm/external/__init__.py
fastlmm/external/pca.py
fastlmm/external/util/__init__.py
fastlmm/external/util/math.py
fastlmm/feature_selection/PerformSelectionDistributable.py
fastlmm/feature_selection/__init__.py
fastlmm/feature_selection/feature_selection_cv.py
fastlmm/feature_selection/feature_selection_example.py
fastlmm/feature_selection/feature_selection_two_kernel.py
fastlmm/feature_selection/kernel_ridge_cv.py
fastlmm/feature_selection/test.py
fastlmm/feature_selection/examples/ScanISP.Toydata.config.py
fastlmm/feature_selection/examples/ScanLMM.Toydata.config.py
fastlmm/feature_selection/examples/ScanOSP.Toydata.config.py
fastlmm/feature_selection/examples/bronze.txt
fastlmm/feature_selection/examples/toydata.5chrom.bed
fastlmm/feature_selection/examples/toydata.5chrom.bim
fastlmm/feature_selection/examples/toydata.5chrom.fam
fastlmm/feature_selection/examples/toydata.bed
fastlmm/feature_selection/examples/toydata.bim
fastlmm/feature_selection/examples/toydata.cov
fastlmm/feature_selection/examples/toydata.dat
fastlmm/feature_selection/examples/toydata.fam
fastlmm/feature_selection/examples/toydata.iidmajor.hdf5
fastlmm/feature_selection/examples/toydata.map
fastlmm/feature_selection/examples/toydata.phe
fastlmm/feature_selection/examples/toydata.shufflePlus.phe
fastlmm/feature_selection/examples/toydata.sim
fastlmm/feature_selection/examples/toydata.snpmajor.hdf5
fastlmm/feature_selection/examples/toydataTest.phe
fastlmm/feature_selection/examples/toydataTrain.phe
fastlmm/inference/__init__.py
fastlmm/inference/ep.py
fastlmm/inference/glmm.py
fastlmm/inference/laplace.py
fastlmm/inference/likelihood.py
fastlmm/inference/linear_regression.py
fastlmm/inference/lmm.py
fastlmm/inference/lmm2k.py
fastlmm/inference/lmm_cov.py
fastlmm/inference/test.py
fastlmm/pyplink/__init__.py
fastlmm/pyplink/plink.py
fastlmm/pyplink/setup.py
fastlmm/pyplink/vcfpy.py
fastlmm/pyplink/altset_list/Consecutive.py
fastlmm/pyplink/altset_list/MinMaxSetSize.py
fastlmm/pyplink/altset_list/NucRangeSet.py
fastlmm/pyplink/altset_list/SnpAndSetNameCollection.py
fastlmm/pyplink/altset_list/Subset.py
fastlmm/pyplink/altset_list/__init__.py
fastlmm/pyplink/snpreader/Bed.py
fastlmm/pyplink/snpreader/Dat.py
fastlmm/pyplink/snpreader/Hdf5.py
fastlmm/pyplink/snpreader/__init__.py
fastlmm/pyplink/snpset/AllSnps.py
fastlmm/pyplink/snpset/PositionRange.py
fastlmm/pyplink/snpset/RandomSnpSet.py
fastlmm/pyplink/snpset/SnpIndexList.py
fastlmm/pyplink/snpset/SnpSetAndName.py
fastlmm/pyplink/snpset/SnpsFromFile.py
fastlmm/pyplink/snpset/__init__.py
fastlmm/util/MetaDistributable.py
fastlmm/util/NearBronze.py
fastlmm/util/SamplePi.py
fastlmm/util/VertexCut.py
fastlmm/util/__init__.py
fastlmm/util/computePC.py
fastlmm/util/compute_auto_pcs.py
fastlmm/util/distributable.py
fastlmm/util/distributabletest.py
fastlmm/util/distributed_map.py
fastlmm/util/genphen.py
fastlmm/util/gensnp.py
fastlmm/util/indirectdistributable.py
fastlmm/util/mingrid.py
fastlmm/util/pickle_io.py
fastlmm/util/preprocess.py
fastlmm/util/run_fastlmmc.py
fastlmm/util/test.py
fastlmm/util/testdistributable.py
fastlmm/util/util.py
fastlmm/util/runner/HPC.py
fastlmm/util/runner/Hadoop.py
fastlmm/util/runner/Hadoop2.py
fastlmm/util/runner/Local.py
fastlmm/util/runner/LocalInParts.py
fastlmm/util/runner/LocalMapper.py
fastlmm/util/runner/LocalMultiProc.py
fastlmm/util/runner/LocalReducer.py
fastlmm/util/runner/__init__.py
fastlmm/util/runner/localfromranges.py
fastlmm/util/standardizer/Beta.py
fastlmm/util/standardizer/Unit.py
fastlmm/util/standardizer/__init__.py
fastlmm/util/stats/__init__.py
fastlmm/util/stats/chi2mixture.py
fastlmm/util/stats/plotp.py
fastlmm/util/stats/quadform/__init__.py
fastlmm/util/stats/quadform/qfc_src/QFC.cpp
fastlmm/util/stats/quadform/qfc_src/QFC.h
fastlmm/util/stats/quadform/qfc_src/wrap_qfc.pyx